B8CFV3_THAPS protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B8CFV3_THAPS

Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily. (420 aa)

Predicted Functional Partners:

B8CBP2_THAPS

0.856

B8C1H9_THAPS

0.770

B8BY49_THAPS

0.647

B8LCV4_THAPS

0.621

B8CCF4_THAPS

0.602

B8C613_THAPS

0.588

B8BZG8_THAPS

0.462

B8CFJ6_THAPS

0.462

B8CFM3_THAPS

0.462

B8BZ65_THAPS

0.426

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BY49_THAPS	B8BZG8_THAPS	B8BY49	B8BZG8	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.993
B8BY49_THAPS	B8CFJ6_THAPS	B8BY49	B8CFJ6	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.993
B8BY49_THAPS	B8CFM3_THAPS	B8BY49	B8CFM3	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.993
B8BY49_THAPS	B8CFV3_THAPS	B8BY49	B8CFV3	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.647
B8BY49_THAPS	B8LCV4_THAPS	B8BY49	B8LCV4	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Predicted protein; Belongs to the PI3/PI4-kinase family.	0.661
B8BZ65_THAPS	B8CFV3_THAPS	B8BZ65	B8CFV3	Peptidyl-prolyl cis-trans isomerase.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.426
B8BZG8_THAPS	B8BY49_THAPS	B8BZG8	B8BY49	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.993
B8BZG8_THAPS	B8CFJ6_THAPS	B8BZG8	B8CFJ6	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.904
B8BZG8_THAPS	B8CFM3_THAPS	B8BZG8	B8CFM3	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.901
B8BZG8_THAPS	B8CFV3_THAPS	B8BZG8	B8CFV3	Ubiquitin-like domain-containing protein.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.462
B8C1H9_THAPS	B8C613_THAPS	B8C1H9	B8C613	Serine/threonine-protein kinase PLK.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.811
B8C1H9_THAPS	B8CFV3_THAPS	B8C1H9	B8CFV3	Serine/threonine-protein kinase PLK.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.770
B8C1H9_THAPS	B8LCV4_THAPS	B8C1H9	B8LCV4	Serine/threonine-protein kinase PLK.	Predicted protein; Belongs to the PI3/PI4-kinase family.	0.406
B8C613_THAPS	B8C1H9_THAPS	B8C613	B8C1H9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PLK.	0.811
B8C613_THAPS	B8CFV3_THAPS	B8C613	B8CFV3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.588
B8CBP2_THAPS	B8CFV3_THAPS	B8CBP2	B8CFV3	WD_REPEATS_REGION domain-containing protein.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.856
B8CCF4_THAPS	B8CFV3_THAPS	B8CCF4	B8CFV3	RanBP2-type domain-containing protein.	Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein; Belongs to the protein kinase superfamily.	0.602
B8CFJ6_THAPS	B8BY49_THAPS	B8CFJ6	B8BY49	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.993
B8CFJ6_THAPS	B8BZG8_THAPS	B8CFJ6	B8BZG8	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.904
B8CFJ6_THAPS	B8CFM3_THAPS	B8CFJ6	B8CFM3	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.903