STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8CG54_THAPSSmall GTPase. (223 aa)    
Predicted Functional Partners:
B8CEY0_THAPS
Metallophos_2 domain-containing protein.
    
 
 0.983
B8C964_THAPS
Uncharacterized protein.
   
 
 0.832
THAPS_38123
Predicted protein.
   
 
 0.706
B8BWR3_THAPS
Uncharacterized protein.
   
 
 0.706
B8BY70_THAPS
Rab-like rab-type small G protein.
   
 
 0.702
B8C9N1_THAPS
Uncharacterized protein.
      
 0.536
B8C9N5_THAPS
Rab-GAP TBC domain-containing protein.
   
 
 0.526
THAPS_23388
Predicted protein.
      
 0.471
B8BXK1_THAPS
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 
 0.425
B8C979_THAPS
Tubby2 protein; Belongs to the TUB family.
   
 
 0.412
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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