STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LASPOL-aspartate oxidase. (570 aa)    
Predicted Functional Partners:
SDH1
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
 
 0.990
B8CCG5_THAPS
Uncharacterized protein.
  
 0.988
B8CAL4_THAPS
Nicotinate-nucleotide pyrophosphorylase.
   
 0.951
B8BXD4_THAPS
Uncharacterized protein.
  
 
 0.875
B8CBG7_THAPS
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.
  
 
 0.865
THAPSDRAFT_735
NADH dehydrogenase.
  
 
 0.859
B8CBX3_THAPS
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.833
B8CDS8_THAPS
Nadh-ubiquinone oxidoreductase.
   
 
 0.813
CSN1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.795
B8LDW8_THAPS
Cytochrome c1.
   
 
 0.780
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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