STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_0587Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family. (198 aa)    
Predicted Functional Partners:
Maqu_0586
KEGG: jan:Jann_4157 anti-sigma factor, ChrR.
 
     0.762
Maqu_0588
PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase.
       0.588
Maqu_0423
KEGG: jan:Jann_4157 anti-sigma factor, ChrR.
  
     0.570
Maqu_1180
anti-ECFsigma factor, ChrR; KEGG: ilo:IL0065 predicted transcription negative regulator.
  
     0.455
Maqu_3233
anti-ECFsigma factor, ChrR; KEGG: abo:ABO_0664 hypothetical protein.
  
     0.443
Maqu_0589
PFAM: MltA-interacting MipA family protein; KEGG: csa:Csal_0351 MltA-interacting MipA.
       0.442
Maqu_0585
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like.
  
    0.406
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.