STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_0598PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase. (514 aa)    
Predicted Functional Partners:
Maqu_0597
PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family.
    0.810
Maqu_0599
PFAM: ferredoxin; KEGG: abo:ABO_0200 ferredoxin, 2Fe-2S.
       0.506
Maqu_0600
PFAM: cytochrome P450; KEGG: abo:ABO_2288 cytochrome P450.
       0.484
Maqu_0596
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_0199 transcriptional regulator, AraC family.
       0.405
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.