STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1005Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mmr:Mmar10_2206 transcriptional regulator, AraC family. (327 aa)    
Predicted Functional Partners:
Maqu_1006
PFAM: NmrA family protein; KEGG: bur:Bcep18194_C6882 NmrA-like.
 
     0.855
Maqu_2134
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: pae:PA3571 transcriptional regulator MmsR.
 
 
 0.726
Maqu_1861
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_01825 AraC-type DNA-binding domain-containing protein.
  
     0.693
Maqu_2846
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: abo:ABO_0832 transcriptional regulator, AraC family.
 
   0.615
Maqu_3796
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bja:bll2332 transcriptional regulatory protein.
  
    0.511
Maqu_2886
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0148 transcriptional regulator, LysR family.
  
    0.487
Maqu_1070
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.465
Maqu_2928
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; KEGG: mba:Mbar_A3285 transcriptional regulator, AraC family.
 
   0.446
Maqu_2177
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain.
  
     0.429
Maqu_2160
KEGG: aba:Acid345_1066 hypothetical protein.
  
     0.428
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.