STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1135PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; domain of unknown function DUF1731; KEGG: mca:MCA0496 conserved hypothetical protein TIGR01777. (301 aa)    
Predicted Functional Partners:
Maqu_0021
Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
      0.874
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
  
 0.704
Maqu_3101
PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pen:PSEEN2739 photolyase.
      0.694
Maqu_1136
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hch:HCH_04767 hypothetical protein.
       0.685
Maqu_1138
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: hch:HCH_04765 hypothetical protein.
  
    0.656
Maqu_3783
PFAM: dihydroneopterin aldolase; KEGG: pfl:PFL_0948 dihydroneopterin aldolase.
      0.653
Maqu_1644
PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: dsy:DSY2350 hypothetical protein.
   
    0.620
Maqu_2949
PFAM: zinc/iron permease; KEGG: cps:CPS_2539 ZIP zinc transporter family protein.
  
    0.556
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
    0.506
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.504
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.