STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1252PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein. (401 aa)    
Predicted Functional Partners:
Maqu_1253
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase.
 
 
 0.977
Maqu_1251
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.951
Maqu_1250
PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family.
 
     0.949
Maqu_1255
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT.
 
  
 0.914
macB
ABC transporter related protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.805
Maqu_3094
PFAM: regulatory protein, TetR; KEGG: net:Neut_1933 transcriptional regulator, TetR family protein.
 
     0.786
Maqu_1254
KEGG: rme:Rmet_1260 hypothetical protein.
       0.716
Maqu_1013
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1583 ABC transporter ATPase.
  
 
 0.634
Maqu_0309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0080 ABC transporter related.
  
 
 0.599
Maqu_1045
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_4279 ABC transporter, ATP-binding protein.
  
 
 0.599
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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