STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1504KEGG: rso:RSc2483 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Maqu_1505
PFAM: protein of unknown function DUF927; KEGG: eba:ebA1345 hypothetical protein.
     0.969
Maqu_0651
PFAM: protein of unknown function DUF927; KEGG: tbd:Tbd_2819 hypothetical protein.
 
     0.889
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.846
Maqu_1503
Hypothetical protein.
       0.773
Maqu_1506
Hypothetical protein.
       0.773
Maqu_1507
Hypothetical protein.
       0.773
Maqu_0552
PFAM: protein of unknown function DUF927; KEGG: shm:Shewmr7_0346 superfamily II helicase and inactivated derivatives-like protein.
 
     0.758
Maqu_1509
Hypothetical protein; KEGG: pca:Pcar_1823 putative integrase prophage protein.
 
    0.711
Maqu_1500
PFAM: phage integrase family protein; KEGG: aeh:Mlg_0637 phage integrase family protein; Belongs to the 'phage' integrase family.
 
    0.692
Maqu_0395
PFAM: phage integrase family protein; KEGG: hch:HCH_00623 integrase; Belongs to the 'phage' integrase family.
 
    0.679
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.