STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1640PFAM: polysaccharide deacetylase; KEGG: sus:Acid_5417 polysaccharide deacetylase. (337 aa)    
Predicted Functional Partners:
Maqu_1639
KEGG: gsu:GSU1954 hypothetical protein.
 
   
 0.867
Maqu_1641
PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_0839 glycosyltransferase-like.
     0.843
Maqu_1638
PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_0846 glycosyltransferase-like.
 
     0.803
Maqu_1642
PFAM: glycosyl transferase, family 2; KEGG: ana:alr3073 probable glycosyl transferase.
 
  
 0.800
Maqu_1636
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: noc:Noc_2478 asparagine synthase, glutamine-hydrolyzing.
 
   
 0.784
Maqu_1637
PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
 
   
 0.752
Maqu_1655
PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU1977 glycosyl transferase, group 2 family protein.
 
  
 0.687
Maqu_1796
PFAM: polysaccharide deacetylase; KEGG: hch:HCH_02169 predicted xylanase/chitin deacetylase.
 
     0.687
Maqu_1635
PFAM: polysaccharide deacetylase; KEGG: mca:MCA0187 hypothetical protein.
 
    
0.681
Maqu_1661
PFAM: sugar transferase; KEGG: hch:HCH_02714 sugar transferase involved in lipopolysaccharide synthesis.
 
   
 0.623
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.