STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_1920PFAM: protein of unknown function DUF1332; KEGG: hch:HCH_06740 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Maqu_1921
3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; KEGG: hch:HCH_02697 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.
       0.737
Maqu_1922
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: hch:HCH_02696 glycerophosphoryl diester phosphodiesterase.
       0.737
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
       0.722
Maqu_1880
PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: hch:HCH_02128 SH3 domain protein.
 
     0.542
dusA
tRNA-U16,U17-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.518
Maqu_0514
PFAM: regulatory protein, LuxR; KEGG: ppr:PBPRB1591 hypothetical protein.
  
     0.454
Maqu_1808
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02633 biopolymer transport protein.
  
     0.441
Maqu_1357
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.440
Maqu_1807
Outer membrane transport energization protein TonB; KEGG: hch:HCH_02634 hypothetical protein; TC 2.C.1.1.1.
  
     0.431
Maqu_1595
Outer membrane transport energization protein TonB; KEGG: hch:HCH_02634 hypothetical protein; TC 2.C.1.1.1.
  
     0.417
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.