STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_2043KEGG: tcx:Tcr_1106 hypothetical protein. (505 aa)    
Predicted Functional Partners:
Maqu_2044
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: tcx:Tcr_1107 alpha-L-glutamate ligase-related protein.
  
 0.956
Maqu_2042
PFAM: protein of unknown function DUF785; KEGG: vch:VC1162 hypothetical protein.
     0.949
Maqu_3694
PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1082 protein of unknown function DUF785.
 
    0.705
Maqu_3032
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403.
  
  
 0.538
Maqu_2158
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0420 methyltransferase type 12.
 
     0.532
Maqu_2885
KEGG: aeh:Mlg_2173 hypothetical protein.
  
     0.521
Maqu_2041
Hypothetical protein.
       0.490
Maqu_1357
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.407
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.