STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_2144PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: vpa:VPA0025 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Maqu_0516
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL2446 cell-cell signaling protein CsgA.
  
     0.496
Maqu_2143
PFAM: protein of unknown function UPF0118; KEGG: rru:Rru_A3520 hypothetical protein.
       0.493
Maqu_0320
Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); KEGG: pat:Patl_0152 deoxyribodipyrimidine photolyase; TIGRFAM: DNA photolyase, FAD- binding- domain protein; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein.
 
     0.484
Maqu_1481
PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_4732 FAD dependent oxidoreductase.
 
     0.447
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.