STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_2153PFAM: beta-lactamase domain protein; KEGG: pau:PA14_56540 putative flavoprotein. (266 aa)    
Predicted Functional Partners:
Maqu_3091
TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; EAL domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
  
  
 0.700
Maqu_3100
KEGG: hch:HCH_02266 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.681
Maqu_1803
KEGG: csa:Csal_1430 transcriptional regulators, TraR/DksA family.
   
    0.622
Maqu_0434
PFAM: OmpW family protein; KEGG: atc:AGR_L_3239 hypothetical outer-membrane protein Y4MB precursor.
   
    0.542
Maqu_3824
PFAM: OmpW family protein; KEGG: pst:PSPTO_0679 outer membrane protein OmpW.
   
    0.542
Maqu_2154
PFAM: protein of unknown function DUF28; KEGG: csa:Csal_0810 protein of unknown function DUF28.
       0.501
Maqu_2152
KEGG: bpm:BURPS1710b_A1412 hypothetical protein.
       0.459
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.451
Maqu_0372
PFAM: Di-haem cytochrome c peroxidase; KEGG: rru:Rru_A1789 cytochrome-c peroxidase.
   
  
 0.422
Maqu_3607
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pae:PA3613 hypothetical protein.
   
    0.408
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.