STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_2392Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1044 aa)    
Predicted Functional Partners:
Maqu_2391
PFAM: restriction modification system DNA specificity domain; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative.
 
  
 0.965
Maqu_2393
PFAM: protein of unknown function DUF45; KEGG: noc:Noc_2910 protein of unknown function DUF45.
 
   
 0.938
Maqu_2389
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit.
 
 0.916
Maqu_3380
PFAM: N-6 DNA methylase; KEGG: noc:Noc_1809 type I restriction enzyme M protein.
 
 
 0.916
Maqu_3382
PFAM: restriction modification system DNA specificity domain; KEGG: pol:Bpro_1941 restriction endonuclease S subunits-like.
 
  
 0.882
Maqu_0031
PFAM: N-6 DNA methylase; KEGG: son:SO4265 type I restriction-modification system, M subunit.
 
 
 0.862
Maqu_2394
KEGG: eli:ELI_14760 hypothetical protein.
 
   0.849
Maqu_0030
PFAM: restriction modification system DNA specificity domain; KEGG: spt:SPA4345 subunit S of type I restriction-modification system.
 
  
 0.790
Maqu_0412
PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: pcr:Pcryo_2366 N-6 DNA methylase.
  
     0.757
Maqu_0558
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein.
 
    0.698
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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