STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_2503PFAM: histone deacetylase superfamily; KEGG: hch:HCH_04816 deacetylases, including yeast histone deacetylase and acetoin utilization protein. (308 aa)    
Predicted Functional Partners:
Maqu_2502
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: hch:HCH_04815 acyl-CoA synthetase (NDP forming).
 
   
 0.829
rapA
Superfamily II DNA/RNA helicases, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.768
Maqu_1314
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: ecs:ECs5261 putative ATP-dependent helicase.
  
 
 0.585
Maqu_1312
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: deh:cbdb_A108 putative helicase (SNF2 family).
  
 
 0.560
Maqu_2299
KEGG: csa:Csal_0952 hypothetical protein.
    
 0.527
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
    
 0.510
Maqu_2601
PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_06999 superfamily II DNA/RNA helicase, SNF2 family.
    
 0.485
Maqu_2340
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: hch:HCH_01740 FOG: CBS domain.
 
    0.443
Maqu_3253
PFAM: acetyl-CoA hydrolase/transferase; KEGG: rru:Rru_A2513 acetyl-CoA hydrolase/transferase.
      0.433
Maqu_0130
KEGG: ilo:IL1239 hypothetical protein.
   
 0.418
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.