STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_3389KEGG: mfa:Mfla_1160 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Maqu_3388
PFAM: peptidase M48, Ste24p; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p.
 
     0.894
Maqu_3387
DegP2 peptidase, Serine peptidase, MEROPS family S01B; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3420 PDZ/DHR/GLGF.
 
     0.818
Maqu_3393
PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: mfa:Mfla_1170 ATPase AAA-2; Belongs to the ClpA/ClpB family.
 
     0.708
ftsH-3
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
 
     0.676
Maqu_3392
Cardiolipin synthetase 2; PFAM: phospholipase D/Transphosphatidylase; KEGG: mfa:Mfla_1169 phospholipase D/transphosphatidylase.
 
     0.616
Maqu_3394
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3412 small HspC2 heat shock protein; Belongs to the small heat shock protein (HSP20) family.
 
     0.595
Maqu_3390
KEGG: dde:Dde_3417 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.583
Maqu_0554
Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sat:SYN_01828 hypothetical cytosolic protein.
  
     0.562
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.