STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_3555TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; type IV pilus assembly PilZ; protein of unknown function DUF1631; KEGG: hch:HCH_01032 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (1249 aa)    
Predicted Functional Partners:
Maqu_0247
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: gsu:GSU0474 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.916
Maqu_2241
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: hch:HCH_01804 signal transduction histidine kinase.
  
  
 0.894
Maqu_1573
PFAM: type IV pilus assembly PilZ; KEGG: hch:HCH_02415 Tfp pilus assembly protein PilZ.
    
   0.855
Maqu_2223
KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
0.810
Maqu_2419
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_05849 response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
    0.792
Maqu_3887
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bur:Bcep18194_A6290 diguanylate phosphodiesterase (EAL domain).
  
    0.788
Maqu_2249
KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.
 
 
0.781
Maqu_3675
KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.748
Maqu_0491
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: pau:PA14_49160 hypothetical protein.
 
 
0.745
Maqu_2785
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_05402 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.744
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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