STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_3723Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: aeh:Mlg_0054 sigma54 specific transcriptional regulator, fis family. (521 aa)    
Predicted Functional Partners:
Maqu_2715
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.809
Maqu_3722
KEGG: aeh:Mlg_0055 hypothetical protein.
     
 0.790
Maqu_3721
PFAM: ImpA domain protein; KEGG: aeh:Mlg_0056 ImpA domain protein.
     
 0.780
Maqu_3720
Transcriptional regulator, Fis family; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein.
       0.670
Maqu_3728
FHA domain containing protein; KEGG: eca:ECA3440 hypothetical protein.
     
 0.535
Maqu_3725
KEGG: aeh:Mlg_0053 hypothetical protein.
     
 0.532
Maqu_3719
PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein.
       0.513
Maqu_3718
Hypothetical protein.
       0.497
Maqu_3727
KEGG: plu:plu0366 hypothetical protein.
     
 0.497
Maqu_3726
PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein.
       0.492
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.