STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_3833KEGG: csa:Csal_2472 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Maqu_3834
PFAM: histone deacetylase superfamily; KEGG: rde:RD1_4135 acetylpolyamine aminohydrolase.
       0.557
Maqu_0078
PFAM: major facilitator superfamily MFS_1; KEGG: nwi:Nwi_1437 major facilitator superfamily MFS_1.
  
     0.538
Maqu_3645
KEGG: sdn:Sden_1599 hypothetical protein.
  
     0.513
Maqu_3832
PFAM: transposase, IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase.
       0.497
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.