Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gura_1220 | Gura_1325 | Gura_1220 | Gura_1325 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | PFAM: UvrD/REP helicase. | 0.782 |
Gura_1220 | Gura_1845 | Gura_1220 | Gura_1845 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | PFAM: UvrD/REP helicase. | 0.765 |
Gura_1220 | Gura_4326 | Gura_1220 | Gura_4326 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase. | 0.763 |
Gura_1220 | polA | Gura_1220 | Gura_3902 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.967 |
Gura_1220 | radA | Gura_1220 | Gura_0130 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.586 |
Gura_1220 | recA | Gura_1220 | Gura_0219 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.990 |
Gura_1220 | recX | Gura_1220 | Gura_0221 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.586 |
Gura_1220 | uvrC | Gura_1220 | Gura_0365 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.590 |
Gura_1325 | Gura_1220 | Gura_1325 | Gura_1220 | PFAM: UvrD/REP helicase. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.782 |
Gura_1325 | Gura_1845 | Gura_1325 | Gura_1845 | PFAM: UvrD/REP helicase. | PFAM: UvrD/REP helicase. | 0.927 |
Gura_1325 | Gura_4326 | Gura_1325 | Gura_4326 | PFAM: UvrD/REP helicase. | ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase. | 0.908 |
Gura_1325 | polA | Gura_1325 | Gura_3902 | PFAM: UvrD/REP helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.711 |
Gura_1325 | radA | Gura_1325 | Gura_0130 | PFAM: UvrD/REP helicase. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.586 |
Gura_1325 | recA | Gura_1325 | Gura_0219 | PFAM: UvrD/REP helicase. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.884 |
Gura_1325 | uvrC | Gura_1325 | Gura_0365 | PFAM: UvrD/REP helicase. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.765 |
Gura_1845 | Gura_1220 | Gura_1845 | Gura_1220 | PFAM: UvrD/REP helicase. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.765 |
Gura_1845 | Gura_1325 | Gura_1845 | Gura_1325 | PFAM: UvrD/REP helicase. | PFAM: UvrD/REP helicase. | 0.927 |
Gura_1845 | Gura_4326 | Gura_1845 | Gura_4326 | PFAM: UvrD/REP helicase. | ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase. | 0.927 |
Gura_1845 | polA | Gura_1845 | Gura_3902 | PFAM: UvrD/REP helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.711 |
Gura_1845 | radA | Gura_1845 | Gura_0130 | PFAM: UvrD/REP helicase. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.586 |
page 1 of 4