STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_0508PFAM: glycosyl transferase, family 2. (351 aa)    
Predicted Functional Partners:
Gura_0505
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
   
 0.830
Gura_0506
PFAM: Radical SAM domain protein.
 
   
 0.822
Gura_0509
PFAM: Radical SAM domain protein.
 
   
 0.809
Gura_0507
PFAM: glycosyl transferase, family 9.
 
  
 0.808
Gura_0689
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
 
 0.663
Gura_3098
PFAM: beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
  
 
 0.649
Gura_3056
Hypothetical protein.
  
 
 0.636
Gura_3804
PFAM: glycosyl transferase, family 2.
 
  
 0.634
Gura_0504
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.618
Gura_0985
PFAM: Hpt domain protein.
 
 
 0.616
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.