STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_1125PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (327 aa)    
Predicted Functional Partners:
Gura_1124
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
  
 0.927
Gura_1123
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
   
 0.891
Gura_1122
PFAM: nickel-dependent hydrogenase, large subunit.
 
   
 0.884
Gura_0145
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
  
 0.868
Gura_3587
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
  
 0.868
Gura_0152
Protein of unknown function DUF162; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF162; protein of unknown function DUF224, cysteine-rich region domain protein.
  
 
 0.782
Gura_0153
PFAM: protein of unknown function DUF162.
  
 
 0.628
Gura_0147
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
   
 0.605
Gura_3585
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
   
 0.605
Gura_4126
PFAM: protein of unknown function DUF1121.
  
 
 0.595
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.