STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_1248PFAM: plasmid stabilization system. (133 aa)    
Predicted Functional Partners:
Gura_1249
Transcriptional regulator, CopG family.
 
 
 0.982
Gura_2717
Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein.
 
 
 0.743
Gura_1247
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.550
Gura_2718
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system.
  
     0.495
Gura_1252
PFAM: Post-segregation antitoxin CcdA.
 
     0.468
Gura_1250
PFAM: HNH endonuclease.
       0.428
Gura_1245
PFAM: protein of unknown function DUF140.
       0.421
lon-2
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.421
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.