STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_1588PFAM: membrane protein involved in aromatic hydrocarbon degradation. (422 aa)    
Predicted Functional Partners:
Gura_1591
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
  
 0.699
Gura_3098
PFAM: beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
  
  
 0.653
Gura_1590
PFAM: AMP-dependent synthetase and ligase.
 
   
 0.522
Gura_1586
Hypothetical protein.
  
    0.507
Gura_1597
PFAM: alpha/beta hydrolase fold.
 
   
 0.480
Gura_1608
PFAM: AMP-dependent synthetase and ligase.
   
  
 0.475
Gura_1587
Hypothetical protein.
       0.473
Gura_1589
Hypothetical protein.
       0.432
Gura_3949
PFAM: Tetratricopeptide TPR_2 repeat protein.
  
     0.413
Gura_1573
PFAM: AMP-dependent synthetase and ligase.
  
  
 0.404
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.