STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_1814TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain. (944 aa)    
Predicted Functional Partners:
Gura_1811
PFAM: Fimbrial assembly family protein.
 
 
 0.993
Gura_1813
Hypothetical protein.
 
 
 0.992
Gura_1812
PFAM: Pilus assembly protein, PilO.
 
 
 0.986
Gura_1810
TIGRFAM: type IV pilus assembly protein PilM.
 
 
 0.976
Gura_0684
Type II secretory pathway component PulC-like protein.
 
 
 0.951
Gura_3691
PFAM: Peptidoglycan-binding LysM.
 
 
 0.942
Gura_0205
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.2.1.
 
 
 0.875
Gura_2680
PFAM: type II secretion system protein.
 
 
 0.866
Gura_0206
Cell division and transport-associated protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; TC 2.C.1.2.1.
 
 
 0.837
Gura_3073
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
 
 
 0.826
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.