STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_2519Protein of unknown function DUF362; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF362. (382 aa)    
Predicted Functional Partners:
Gura_3483
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding.
  
  
 0.819
Gura_4330
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.819
Gura_2521
PFAM: NADPH-dependent FMN reductase.
 
   
 0.777
Gura_4176
Sigma54 specific transcriptional regulator, Fis family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; hydrogenase large subunit domain protein; Fe-S cluster domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
   
 
 0.758
Gura_2523
PFAM: AMP-dependent synthetase and ligase.
       0.731
Gura_2526
PFAM: beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.726
Gura_2520
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; Belongs to the UbiD family.
       0.718
Gura_2522
PFAM: Xylose isomerase domain protein TIM barrel.
       0.718
Gura_2524
PFAM: Xylose isomerase domain protein TIM barrel.
       0.718
Gura_2525
Hypothetical protein.
       0.718
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.