STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_2547PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase. (740 aa)    
Predicted Functional Partners:
Gura_2552
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
 0.985
Gura_2550
TIGRFAM: putative outer membrane adhesin like protein; PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein.
 
  
 0.915
Gura_3231
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Belongs to the ABC transporter superfamily. Lipid exporter (TC 3.A.1.106) family.
 
 
 
0.812
Gura_0894
PFAM: ABC transporter related; SMART: AAA ATPase.
   
0.811
Gura_3872
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 
 
0.810
Gura_3873
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 
 
0.805
Gura_0159
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 
 
0.796
Gura_0160
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 
 
0.794
Gura_2701
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 
0.790
Gura_1512
Hypothetical protein.
   
 
 0.780
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.