STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_3108PFAM: beta-lactamase domain protein. (233 aa)    
Predicted Functional Partners:
Gura_3098
PFAM: beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
 
 
 0.818
Gura_2013
PFAM: 2-nitropropane dioxygenase, NPD.
  
 
 0.699
Gura_3107
PFAM: 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
       0.682
Gura_3105
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; Malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; 2-nitropropane dioxygenase, NPD.
 
  
 0.672
Gura_3095
PFAM: beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
 
 
 
 0.668
Gura_3106
PFAM: acyl transferase domain protein.
 
   
 0.666
Gura_3094
PFAM: beta-ketoacyl synthase; phosphopantetheine-binding.
 
 
 
 0.635
Gura_2012
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR.
   
 
 0.571
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.530
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.524
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.