Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gura_0698 | Gura_3693 | Gura_0698 | Gura_3693 | Hypothetical protein. | PFAM: peptidase U32. | 0.593 |
Gura_0698 | Gura_4289 | Gura_0698 | Gura_4289 | Hypothetical protein. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.457 |
Gura_3693 | Gura_0698 | Gura_3693 | Gura_0698 | PFAM: peptidase U32. | Hypothetical protein. | 0.593 |
Gura_3693 | Gura_3694 | Gura_3693 | Gura_3694 | PFAM: peptidase U32. | PFAM: glycosyl transferase, family 39. | 0.584 |
Gura_3693 | Gura_3695 | Gura_3693 | Gura_3695 | PFAM: peptidase U32. | PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family. | 0.452 |
Gura_3693 | Gura_4077 | Gura_3693 | Gura_4077 | PFAM: peptidase U32. | PFAM: O-methyltransferase, family 3. | 0.593 |
Gura_3693 | Gura_4289 | Gura_3693 | Gura_4289 | PFAM: peptidase U32. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.463 |
Gura_3693 | cpoB-2 | Gura_3693 | Gura_3692 | PFAM: peptidase U32. | Tetratricopeptide domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | 0.433 |
Gura_3693 | der | Gura_3693 | Gura_3149 | PFAM: peptidase U32. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.474 |
Gura_3693 | nuoBCD | Gura_3693 | Gura_0333 | PFAM: peptidase U32. | NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 20 kDa subunit family. I [...] | 0.472 |
Gura_3693 | rlmN | Gura_3693 | Gura_1581 | PFAM: peptidase U32. | 23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.453 |
Gura_3693 | trmFO | Gura_3693 | Gura_3688 | PFAM: peptidase U32. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.510 |
Gura_3694 | Gura_3693 | Gura_3694 | Gura_3693 | PFAM: glycosyl transferase, family 39. | PFAM: peptidase U32. | 0.584 |
Gura_3694 | Gura_3695 | Gura_3694 | Gura_3695 | PFAM: glycosyl transferase, family 39. | PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family. | 0.731 |
Gura_3695 | Gura_3693 | Gura_3695 | Gura_3693 | PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family. | PFAM: peptidase U32. | 0.452 |
Gura_3695 | Gura_3694 | Gura_3695 | Gura_3694 | PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family. | PFAM: glycosyl transferase, family 39. | 0.731 |
Gura_4077 | Gura_3693 | Gura_4077 | Gura_3693 | PFAM: O-methyltransferase, family 3. | PFAM: peptidase U32. | 0.593 |
Gura_4077 | Gura_4289 | Gura_4077 | Gura_4289 | PFAM: O-methyltransferase, family 3. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.457 |
Gura_4289 | Gura_0698 | Gura_4289 | Gura_0698 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.457 |
Gura_4289 | Gura_3693 | Gura_4289 | Gura_3693 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | PFAM: peptidase U32. | 0.463 |
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