Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0043PFAM: alpha/beta hydrolase fold; KEGG: ppu:PP5253 arylesterase, putative. (301 aa)    
Predicted Functional Partners:
Acel_0044
PFAM: regulatory protein, MarR; KEGG: sma:SAV2989 MarR-family transcriptional regulator.
       0.517
Acel_0045
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO7425 multidrug-efflux transporter protein.
       0.517
Acel_0042
PFAM: OsmC family protein; KEGG: bur:Bcep18194_B1521 hypothetical protein.
       0.492
Acel_2052
Cysteinyl-tRNA synthetase-like protein; KEGG: hal:VNG1097G cysteinyl-tRNA synthetase.
 
     0.486
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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