STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0054KEGG: fra:Francci3_4327 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Acel_0055
KEGG: fra:Francci3_4326 hypothetical protein.
       0.817
Acel_0053
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pac:PPA1716 putative magnesium transport protein.
       0.773
Acel_0056
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV4009 magnesium or manganese-dependent protein phosphatase.
       0.773
Acel_1610
PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_3101 hypothetical protein.
  
     0.534
thiC
Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
       0.468
Acel_0057
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV5123 putative RNA polymerase ECF-subfamily sigma factor.
  
    0.429
Acel_0058
Putative transmembrane anti-sigma factor; KEGG: mpa:MAP4202 hypothetical protein.
       0.425
Acel_1599
KEGG: fra:Francci3_1159 hypothetical protein.
  
     0.404
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.