Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acel_0055KEGG: fra:Francci3_4326 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Acel_0056
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV4009 magnesium or manganese-dependent protein phosphatase.
 
     0.839
Acel_0054
KEGG: fra:Francci3_4327 hypothetical protein.
       0.817
Acel_0053
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pac:PPA1716 putative magnesium transport protein.
 
     0.800
Acel_1036
KEGG: mpa:MAP1284 hypothetical protein.
  
     0.702
Acel_1485
KEGG: sco:SCO5788 hypothetical protein.
  
     0.640
Acel_2136
KEGG: fra:Francci3_4527 conserved hypothetical protein.
  
     0.598
Acel_2151
PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein.
  
     0.592
Acel_1331
KEGG: fra:Francci3_3215 putative secreted protein.
  
     0.585
Acel_0364
KEGG: nfa:nfa8910 hypothetical protein.
  
     0.565
Acel_0994
KEGG: nfa:nfa9060 hypothetical protein.
  
     0.528
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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