STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0058Putative transmembrane anti-sigma factor; KEGG: mpa:MAP4202 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Acel_0057
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV5123 putative RNA polymerase ECF-subfamily sigma factor.
 
 
 0.999
Acel_0266
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; Lycopene beta and epsilon cyclase; KEGG: fra:Francci3_0537 geranylgeranyl reductase.
   
  
 0.602
Acel_0056
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV4009 magnesium or manganese-dependent protein phosphatase.
 
     0.521
Acel_0027
PFAM: Secreted repeat of unknown function; KEGG: sco:SCO7673 lipoprotein.
 
     0.503
Acel_0055
KEGG: fra:Francci3_4326 hypothetical protein.
 
     0.501
Acel_2146
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3892 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.428
Acel_0350
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO0194 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.427
Acel_0539
KEGG: tfu:Tfu_0549 anti-sigma factor.
  
   
 0.426
Acel_0053
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pac:PPA1716 putative magnesium transport protein.
       0.425
Acel_0054
KEGG: fra:Francci3_4327 hypothetical protein.
       0.425
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.