STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0061Nickel uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sco:SCO4180 iron uptake regulatory protein; Belongs to the Fur family. (150 aa)    
Predicted Functional Partners:
Acel_0062
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sco:SCO4181 hypothetical protein; Belongs to the GcvT family.
       0.817
Acel_2085
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
  
     0.771
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.570
Acel_2087
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_2478 ABC transporter related.
  
  
 0.417
Acel_0501
PFAM: regulatory protein, ArsR; KEGG: mpa:MAP2725c hypothetical protein.
  
    0.402
Acel_1134
Transcriptional regulator; KEGG: tfu:Tfu_1988 putative DNA-binding protein.
  
    0.402
Acel_1664
Putative transcriptional regulator; KEGG: mbo:Mb2651 hypothetical protein.
  
    0.402
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.