STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0062PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sco:SCO4181 hypothetical protein; Belongs to the GcvT family. (352 aa)    
Predicted Functional Partners:
Acel_0061
Nickel uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sco:SCO4180 iron uptake regulatory protein; Belongs to the Fur family.
       0.810
Acel_0779
PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein.
      0.742
Acel_0868
KEGG: sma:SAV5784 hypothetical protein.
  
     0.562
Acel_0954
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nfa:nfa17050 hypothetical protein; Belongs to the HesB/IscA family.
 
 
 0.526
Acel_1616
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_2221 uroporphyrin-III C-methyltransferase, C-terminal:siroheme synthase, N-terminal.
     
 0.516
Acel_1908
PFAM: Septum formation initiator; KEGG: sma:SAV3532 hypothetical protein.
  
     0.457
Acel_1827
PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: fra:Francci3_3834 O-methyltransferase, family 3.
  
     0.454
Acel_0253
PFAM: ResB family protein; KEGG: tfu:Tfu_2702 putative integral membrane protein.
  
     0.432
Acel_0470
KEGG: sma:SAV3061 hypothetical protein.
  
     0.431
Acel_1026
KEGG: tfu:Tfu_1117 hypothetical protein.
  
     0.429
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.