STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0065KEGG: sma:SAV4026 AmfC protein. (191 aa)    
Predicted Functional Partners:
Acel_1369
PFAM: sporulation and cell division protein SsgA; KEGG: sco:SCO1541 regulator.
  
   
 0.791
Acel_1546
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.756
Acel_2009
Acylaminoacyl-peptidase; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: sma:SAV4564 peptidase.
  
     0.754
Acel_1303
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sma:SAV6861 DNA-binding protein.
  
   
 0.753
Acel_0017
KEGG: sco:SCO3852 hypothetical protein.
  
     0.735
Acel_0370
TIGRFAM: chorismate mutase; KEGG: mbo:Mb0973c hypothetical protein.
  
     0.692
Acel_0946
TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: sco:SCO2321 secreted protein.
  
     0.640
Acel_1141
KEGG: sco:SCO1839 transcriptional regulator.
  
     0.545
Acel_0418
KEGG: tws:TW612 conserved hypothetical protein containing glycosyltransferase domain.
  
     0.506
Acel_2023
KEGG: fra:Francci3_0945 hypothetical protein.
  
     0.496
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.