Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0097KEGG: nfa:nfa53000 hypothetical protein. (103 aa)    
Predicted Functional Partners:
Acel_0098
KEGG: fra:Francci3_4393 hypothetical protein.
  
    0.767
Acel_0099
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.754
Acel_1776
PFAM: UvrD/REP helicase; SMART: AAA ATPase; KEGG: tfu:Tfu_0523 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.665
Acel_0997
KEGG: fra:Francci3_1402 putative membrane protein.
  
     0.639
Acel_1521
PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_3572 GCN5-related N-acetyltransferase.
  
     0.565
Acel_1386
KEGG: sco:SCO6030 hypothetical protein.
  
     0.524
Acel_0463
KEGG: sma:SAV5046 hypothetical protein.
  
    0.514
Acel_0399
PFAM: membrane-flanked domain; KEGG: nfa:nfa9960 hypothetical protein.
  
     0.509
Acel_1165
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sco:SCO1676 hypothetical protein.
  
     0.502
Acel_0157
KEGG: tfu:Tfu_0369 hypothetical protein.
  
     0.500
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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