STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0110PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV3894 integral membrane efflux protein. (429 aa)    
Predicted Functional Partners:
Acel_0109
PFAM: regulatory protein, MarR; KEGG: fra:Francci3_0086 transcriptional regulator, MarR family.
 
     0.816
Acel_1160
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sma:SAV6797 putative rRNA methylase.
 
      0.713
Acel_1107
KEGG: tfu:Tfu_2201 hypothetical protein.
   
    0.584
Acel_0111
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.526
Acel_0108
KEGG: fra:Francci3_4418 hypothetical protein.
       0.427
Acel_0107
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4329 integral membrane protein.
     
 0.400
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.