Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acel_0136KEGG: sco:SCO0359 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Acel_1039
PFAM: oxidoreductase domain protein.
 
     0.557
Acel_0680
KEGG: sco:SCO5444 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35.
   
    0.533
Acel_0677
PFAM: aminoglycoside phosphotransferase; KEGG: fra:Francci3_3680 putative pep2 protein.
   
    0.524
Acel_2045
PFAM: Acetyl xylan esterase; KEGG: sma:SAV1302 putative cephalosporin C deacetylase.
  
     0.467
Acel_0137
PFAM: phosphoribosyltransferase; KEGG: mtc:MT0597 hypothetical protein.
       0.464
Acel_0582
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr1887 hypothetical protein.
 
     0.448
Acel_0681
Isoamylase; KEGG: sma:SAV2789 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
   
    0.417
Acel_1372
Isoamylase; KEGG: cef:CE2010 putative glycogen debranching enzyme; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
   
    0.417
Acel_0723
PFAM: FAD linked oxidase domain protein; KEGG: sma:SAV2090 putative xylitol oxidase.
  
     0.410
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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