Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acel_0177G5 domain protein; PFAM: protein of unknown function DUF348; Transglycosylase domain protein; G5 domain protein; KEGG: sco:SCO3150 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Acel_1880
KEGG: tfu:Tfu_0458 secreted protein.
    
 0.906
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.905
Acel_0176
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: fra:Francci3_3965 TatD-related deoxyribonuclease.
     
 0.693
Acel_1230
PFAM: protein of unknown function DUF881; KEGG: sco:SCO1387 membrane associated protein.
  
     0.592
Acel_0015
PFAM: protein of unknown function DUF881; KEGG: pac:PPA0183 membrane spanning protein DUF881.
  
     0.562
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.551
Acel_1229
PFAM: protein of unknown function DUF1290; KEGG: sco:SCO1386 integral membrane protein.
  
     0.544
Acel_1228
PFAM: protein of unknown function DUF881; KEGG: mpa:MAP1538 hypothetical protein.
  
     0.517
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.480
rsmI
Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.431
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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