STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0338Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: fra:Francci3_2434 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Acel_0337
KEGG: fra:Francci3_2435 hypothetical protein.
 
     0.955
Acel_0340
PFAM: ABC-2 type transporter; KEGG: fra:Francci3_1473 ABC-2.
 
     0.619
Acel_0339
KEGG: fra:Francci3_1472 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.554
Acel_1599
KEGG: fra:Francci3_1159 hypothetical protein.
  
     0.466
Acel_1742
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: fra:Francci3_0793 uroporphyrinogen III synthase HEM4.
  
     0.456
Acel_0458
PFAM: major facilitator superfamily MFS_1; KEGG: lxx:Lxx17780 ABC transporter, permease protein.
  
     0.444
Acel_0993
KEGG: pac:PPA1652 hypothetical protein.
  
     0.439
Acel_0994
KEGG: nfa:nfa9060 hypothetical protein.
  
     0.421
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.