STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0340PFAM: ABC-2 type transporter; KEGG: fra:Francci3_1473 ABC-2. (273 aa)    
Predicted Functional Partners:
Acel_0339
KEGG: fra:Francci3_1472 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.967
Acel_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_1429 ABC transporter related.
  
 0.741
Acel_0338
Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: fra:Francci3_2434 hypothetical protein.
 
     0.619
Acel_1368
PFAM: ABC-2 type transporter; KEGG: sco:SCO3338 putative integral membrane protein.
  
  
  0.608
Acel_0153
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa37220 putative ABC transporter ATP-binding protein.
  
 0.590
Acel_0192
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2305 putative ABC transporter ATP-binding subunit.
  
 0.579
Acel_1367
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3339 putative ABC transporter ATP-binding subunit.
  
 0.578
Acel_0337
KEGG: fra:Francci3_2435 hypothetical protein.
 
     0.572
Acel_0744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_0874 ABC transporter related.
  
 0.569
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.536
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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