STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0391PFAM: 2',5' RNA ligase; KEGG: fra:Francci3_0662 2',5' RNA ligase. (176 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.706
Acel_1754
TIGRFAM: DNA binding domain, excisionase family; KEGG: fra:Francci3_0771 putative transcriptional regulator.
  
     0.703
Acel_1756
KEGG: fra:Francci3_0769 hypothetical protein.
  
     0.665
Acel_0155
KEGG: fra:Francci3_0065 hypothetical protein.
  
     0.656
disA
Protein of unknown function DUF147; Participates in a DNA-damage check-point. DisA forms globular foci that rapidly scan along the chromosomes searching for lesions.
  
     0.618
Acel_0389
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pac:PPA1736 conserved protein.
       0.617
Acel_1753
KEGG: fra:Francci3_0772 hypothetical protein.
  
     0.596
Acel_1755
KEGG: fra:Francci3_0770 hypothetical protein.
  
     0.586
Acel_0996
KEGG: sma:SAV6107 hypothetical protein.
  
     0.580
Acel_2014
KEGG: sma:SAV4558 hypothetical protein.
  
     0.571
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.