STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0438PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_0730 glycosyl transferase, family 2. (298 aa)    
Predicted Functional Partners:
Acel_0439
KEGG: fra:Francci3_1327 conserved hypothetical protein.
 
    0.947
Acel_0440
Hypothetical protein.
  
  
 0.574
Acel_1251
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: fra:Francci3_3164 hypothetical protein.
  
 
   0.510
Acel_1249
KEGG: sma:SAV6494 hypothetical protein.
  
     0.450
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
 
   0.450
Acel_0437
PFAM: aldehyde dehydrogenase; KEGG: oih:OB2840 aldehyde dehydrogenase.
       0.441
Acel_2108
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO3975 regulator.
  
     0.431
Acel_0436
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7002 ABC transporter, permease protein; TC 3.A.1.1.-.
       0.401
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.