STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0481PFAM: regulatory protein, TetR; KEGG: sma:SAV705 TetR-family transcriptional regulator. (211 aa)    
Predicted Functional Partners:
Acel_0483
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll2510 probable transporter.
 
     0.664
Acel_0482
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpa:MAP1720 hypothetical protein.
 
     0.646
Acel_0182
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV909 putative RNA polymerase ECF-subfamily sigma factor.
  
  
 0.524
Acel_0895
PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB4395 probable macrophage infectivity potentiator protein Mip.
 
    0.462
Acel_0891
PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein.
 
    0.426
Acel_0559
Signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: sma:SAV3017 two-component system sensor kinase.
     
 0.425
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.