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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0484PFAM: protein of unknown function UPF0089; KEGG: ade:Adeh_2067 hypothetical protein. (732 aa)    
Predicted Functional Partners:
Acel_0485
KEGG: fra:Francci3_2900 putative integral membrane protein.
 
    0.815
Acel_0482
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpa:MAP1720 hypothetical protein.
       0.488
Acel_0483
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll2510 probable transporter.
       0.485
Acel_2002
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: fra:Francci3_4279 anion-transporting ATPase; TC 3.A.4.1.1.
  
     0.463
Acel_0067
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0460 transcriptional regulator, XRE family.
  
     0.451
Acel_1769
PFAM: ABC-1 domain protein; KEGG: fra:Francci3_3788 ABC-1.
 
     0.421
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.