STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0485KEGG: fra:Francci3_2900 putative integral membrane protein. (315 aa)    
Predicted Functional Partners:
Acel_0484
PFAM: protein of unknown function UPF0089; KEGG: ade:Adeh_2067 hypothetical protein.
 
    0.815
Acel_0482
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpa:MAP1720 hypothetical protein.
 
    0.587
Acel_0185
KEGG: sco:SCO6693 hypothetical protein.
  
    0.538
Acel_1695
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV1652 squalene/phytoene dehydrogenase.
  
     0.537
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.532
Acel_0904
KEGG: fra:Francci3_2206 hypothetical protein.
  
    0.529
Acel_1374
Maltooligosyl trehalose hydrolase; KEGG: sco:SCO6078 alpha amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.528
Acel_0922
Hypothetical protein; KEGG: sco:SCO2233 integral membrane protein.
  
    0.506
Acel_0483
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll2510 probable transporter.
       0.485
Acel_1231
Nucleotidyltransferase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: tfu:Tfu_1394 mannose-1-phosphate guanylyltransferase.
 
 
 0.455
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.