Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acel_0500KEGG: dar:Daro_3949 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Acel_0503
PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: tfu:Tfu_2794 hypothetical protein.
     0.986
Acel_0501
PFAM: regulatory protein, ArsR; KEGG: mpa:MAP2725c hypothetical protein.
 
     0.922
Acel_0511
KEGG: mag:amb3531 hypothetical protein.
 
     0.812
Acel_0513
KEGG: pac:PPA0092 hypothetical protein.
 
     0.805
Acel_0493
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rpa:RPA2058 hypothetical protein.
 
     0.796
Acel_0499
4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.648
Acel_0502
KEGG: tfu:Tfu_2795 hypothetical protein.
       0.565
Acel_0498
PFAM: protein of unknown function DUF59; KEGG: pho:PH0311 hypothetical protein.
       0.519
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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