Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acel_0513KEGG: pac:PPA0092 hypothetical protein. (438 aa)    
Predicted Functional Partners:
Acel_0503
PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: tfu:Tfu_2794 hypothetical protein.
     0.979
Acel_0500
KEGG: dar:Daro_3949 hypothetical protein.
 
     0.805
Acel_0501
PFAM: regulatory protein, ArsR; KEGG: mpa:MAP2725c hypothetical protein.
 
     0.773
Acel_0511
KEGG: mag:amb3531 hypothetical protein.
 
     0.742
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
  
 
 
 0.634
Acel_0512
Hypothetical protein.
       0.533
Acel_0507
TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: sco:SCO0218 putative nitrate reductase delta chain NarJ2.
 
   
 0.527
Acel_0493
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rpa:RPA2058 hypothetical protein.
 
     0.511
Acel_0506
TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: sco:SCO0219 putative nitrate reductase delta chain NarI2.
 
   
 0.486
Acel_2037
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
 
 
 0.466
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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